Staff Introduction

: 松本拡高 Hirotaka MATSUMOTO

- Email
hirotaka.matsumotonagasaki-u.ac.jp

- Position / Degree Institute of Integrated Science and Technology, Associate Professor
School of Information and Data Sciences, Associate Professor
Doctor（Science）

- Specialized Field Bioinformatics, Molecular biology, Machine learning

- External Links researchmap
Laboratory

CV

Mar.2011	The University of Tokyo, Department of Bioinformatics and System Biology, Graduated
Mar.2013	The University of Tokyo, Department of Computational Biology, Master Course, Completed
Mar.2016	The University of Tokyo, Department of Computational Biology and Medical Sciences, Doctor Course, Completed
Apr.2016	RIKEN ACCC Bioinformatic Research Unit, Research Fellow of JSPS (PD)
Apr.2019	RIKEN AIP Medical Image Analysis Team, Special Postdoctoral Researcher

Research Activities

Life science and Big data analysis

Innovative advances in various experimental techniques, such as DNA sequencing and genome editing, have made it possible to obtain high-throughput life science data. Our goal is to understand biological phenomena by applying information and mathematical theories to such large-scale data, and to contribute to regenerative medicine and personalized medicine.

Single-cell RNA-seq analysis

We have developed novel algorithms for single-cell RNA sequencing data to understand

- - cellular differentiation process and expression dynamics
  - regulatory network
  - unannotated differentially expressed transcripts.

Reconstruction of differentiation process

Mathematical model for expression dynamics

Parkinson’s disease related miRNA analysis

We have analyzed Parkinson’s disease specific miRNA sets to identify disease-associated metabolic pathway and understand disease mechanism.

This research is collaboration with Prof. Hattori Group at Juntendo University

Educational Activities

Class

School of Information and Data Sciences：First-year Seminar, Information Engineering Experiments Ⅲ, Research Project

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